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Reference Manual¶. This part of the documentation covers implementation details of GROMACS. For quick simulation set-up and short explanations, please refer For getting, building and installing GROMACS, see the Installation guide. For background on algorithms and implementations, see the reference manual.For getting, building and installing GROMACS, see the Installation guide. For background on algorithms and implementations, see the reference manual. development team, GROMACS User Manual version 5.0.4, gromacs.org The GROMACS MD and analysis programs use user-defined groups of atoms to perform This page is linked for the convenience of current GROMACS developers. Normal users should refer to the documentation for their numbered version. For getting, building and installing GROMACS, see the Installation guide. For background on algorithms and implementations, see the reference manual part of

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